Upload files
Drag/drop or manually upload your .fasta file containing your sequences. Multiple files are accepted.
Copy the text content of your files
Copy all the content of your .fasta file containing your sequences and paste it to the Genome text box.
Predict
Click on the Predict button. You will be directed to a webpage containing the results.
Pull the Docker image:
docker pull sganzg/clade_predictor:latest
Run with a directory of FASTA files:
docker run --rm -v /local/path/to/fasta:/data sganzg/ai-clade:latest /data
Run with output directory:
docker run --rm -v /local/path/to/fasta:/data -v /local/path/to/results:/results sganzg/ai-clade:latest /data --output /results
Check results:
/local/path/to/results/results.csv
Complete Genomes
Clade I vs Clade II (XGBoost)
Clade Ia vs Clade Ib (XGBoost)
Partial Genomes
Clade Ia vs Clade Ib vs Clade IIb (CNN)